Function reference
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bortIndex
- Dataset: bortIndex
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Cluster_of_cluster()
- Cluster of cluster
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data.filter()
- Data filter
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data.imputation()
- Data imputation
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data.normalization()
- Data normalization
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Dif.limma()
- Dif.limma
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dot_df
- Dataset: Data PAC
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drugsensitivity()
- Predict drug senstivity for a drug in CGP,and visualize with ggplot.
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exprData
- Dataset: exprData
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lncRNAexp
- Dataset: lncRNA expression
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meta
- Dataset: clinical data
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metabolism()
- Select Metabolisms
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methylation
- Dataset: methylation
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miRNAexp
- Dataset: miRNA expression
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mRNAexp
- Dataset: mRNA expression
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PACplot()
- Plot optimal K
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pathway_all
- Dataset: All metabolism geneset
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quantileNormalizeByFeature()
- Quantile Normalize By Feature
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results
- Dataset: The results of cluster
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studyResponse
- Dataset: studyResponse
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Surplot()
- Surplot